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Magnetic reconnection plays an important role in converting energy while modifying field topology. This process takes place under varied plasma conditions during which the transport of magnetic flux is intrinsic. Identifying active magnetic reconnection sites with in situ observations is challenging. A new technique, Magnetic Flux Transport (MFT) analysis, has been developed recently and proven in numerical simulation for identifying active reconnection efficiently and accurately. In this study, we examine the MFT process in 37 previously reported electron diffusion region (EDR)/reconnection-line crossing events at the day-side magnetopause and in the magnetotail and turbulent magnetosheath using Magnetospheric Multiscale measurements. The coexisting inward and outward MFT flows at an X-point provides a signature that magnetic field lines become disconnected and reconnected. The application of MFT analysis to in-situ observations demonstrates that MFT can successfully identify active reconnection sites under complex varied conditions, including asymmetric and turbulent upstream conditions. It also provides a higher rate of identification than plasma outflow jets alone. MFT can be applied to in situ measurements from both single- and multi-spacecraft missions and laboratory experiments.